PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G348800.1.p
Common NameSb04g037550, SORBIDRAFT_04g037550
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 216aa    MW: 22275.4 Da    PI: 7.8958
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G348800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.32.5e-38271281101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrr+C+++Cv+apyf ++q +++fa++hk+FGasn +kll++lp  +r +a+ +++yeA+ar+rdPvyG+v+ i++lqqq++
  Sobic.004G348800.1.p  27 PCGACKFLRRRCVPECVFAPYFSSDQgAARFAAIHKVFGASNASKLLSHLPVADRCEAVVTITYEAQARLRDPVYGCVAQIFALQQQVA 115
                           7************************989************************************************************* PP

                DUF260  89 qlkaelallkeel 101
                            l+a+l ++k++l
  Sobic.004G348800.1.p 116 ILQAQLMQAKAQL 128
                           ******9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.87626128IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3727125IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAGAAAAAAA NGGTTAAAAA ATGAGSPCGA CKFLRRRCVP ECVFAPYFSS DQGAARFAAI  60
HKVFGASNAS KLLSHLPVAD RCEAVVTITY EAQARLRDPV YGCVAQIFAL QQQVAILQAQ  120
LMQAKAQLAC GVQGAAHSPA SHQWPDSASI SALLRQDTAC SARRPGPLDD CFMPELMAGF  180
RDDVAAAAQH CAGKVDAGEL QYLAQAMMRS PNYSL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641871e-114AK064187.1 Oryza sativa Japonica Group cDNA clone:002-104-C02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454795.11e-154hypothetical protein SORBIDRAFT_04g037550
SwissprotQ9SLB78e-61LBD16_ARATH; LOB domain-containing protein 16
TrEMBLC5XVZ81e-154C5XVZ8_SORBI; Putative uncharacterized protein Sb04g037550
STRINGSb04g037550.11e-153(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105993443
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.17e-44lateral organ boundaries-domain 16